A list of the column names allowed in the data structure that is returned by the build_features method:
field | value |
---|---|
segment | segment ID |
id | feature ID |
feature_id | feature ID |
label | feature text label |
feature_label | feature text label |
start | feature start position |
end | feature end position |
ori | feature strand |
phase | feature phase |
type | feature type ID |
typetxt | feature type text label |
typecategory | feature type category |
type_category | feature type category |
typesubparts | feature has subparts |
typesuperparts | feature has superparts |
typereference | feature is reference |
method | annotation method ID |
method_label | annotation method text label |
score | annotation score |
note | feature text note(s) |
########################################################################## # For one or more links: link => $ or [$,$,$...] # feature link href linktxt => $ or [$,$,$...] # feature link label # For hash-based links: link => { $ => $, # href => label ... } ############################################################################### # For a single target: target_id => $ # target ID target_start => $ # target start position target_stop => $ # target end position targettxt => $ # target text label # For multiple targets: target => scalar or [{ id => $, start => $, stop => $, targettxt => $, },{}...] ############################################################################### # For a single group: group_id => $ # feature group ID grouplabel => $ # feature group text label grouptype => $ # feature group type ID groupnote => $ # feature group text note grouplink => $ # feature group ID grouplinktxt => $ # feature group ID # For multiple groups: group => [{ grouplabel => $ grouptype => $ groupnote => $ grouplink => $ grouplinktxt => $ note => $ or [$,$,$...] target => [{ id => $ start => $ stop => $ targettxt => $ }], }, {}...]